NDES Virtual Directories don't show up in IIS ,Windows Server 2008 R2

Hi

I'm trying to secure a NDES server ,but no Virtual Directories are shown in IIS.

• The NDES server is installed on a member server (2008 R2 Enterprise).
• NDES is the only CA related role installed on this server
• NDES is working correctly even though it's not showing in IIS
• Have tried certutil -vroot as suggested several places ,but this command seems to only be for webenrollment ,not NDES.
• MSCEP and MSCEP admin is affected by settings to the default web site.

How do i solve this?

Thomas Larsen