Unload CA default Templates

I am building an enterprise sub CA and using the CAconfig.inf with the option (LoadDefaultTemplates=0). I placed the file to C:\windows directory. After the CA is built, I noticed default templates were loaded into the Certificate Templates folder using Certification Authority snap-in. Is there a proper way to unload these templates from this CA? There is a delete option when I right click on each template in the Certificate Templates folderà Certification Authority snap-in, I just want to make sure this delete option won’t affect the actual templates published in Active Directory.

Thanks,